BayesTME¶
A unified statistical framework for spatial transcriptomics.
This package implements BayesTME, a fully Bayesian method for analyzing ST data without needing single-cell RNA-seq (scRNA) reference data.
Contents¶
- Installation
- Overview
- Nextflow Pipeline
- Output
- Example Plots
- Data Format
- Reference scRNA
- Command Line Interface
- bayestme package
- Submodules
- bayestme.bleeding_correction module
- bayestme.cv_likelihoods module
- bayestme.data module
- bayestme.deconvolution module
- bayestme.svi.deconvolution module
- bayestme.expression_truth module
- bayestme.gene_filtering module
- bayestme.log_config module
- bayestme.phenotype_selection module
- bayestme.plot.common module
- bayestme.plot.deconvolution module
- bayestme.semi_synthetic_spatial module
- bayestme.spatial_transcriptional_programs module
- bayestme.synthetic_data module
- bayestme.utils module
- Github