Demo Notebooks
==============

We have provided several iPython notebooks which demonstrate the different components of BayesTME.

* `Bleed Correction <https://github.com/tansey-lab/bayestme/blob/main/notebooks/bleeding_correction.ipynb>`_ (Run it on `Colab <https://colab.research.google.com/drive/1NK8rgr6O54T4KolGUkW8OgRzaf2iy56A?usp=sharing>`_)
* `Deconvolution <https://github.com/tansey-lab/bayestme/blob/main/notebooks/deconvolution.ipynb>`_ (Run it on `Colab <https://colab.research.google.com/drive/12hzWWEi_Wrjk4Apowuagwor8_4Zmlk1E?usp=sharing>`_)
* `Spatial Differential Expression <https://github.com/tansey-lab/bayestme/blob/main/notebooks/spatial_differential_expression.ipynb>`_ (Run it on `Colab <https://colab.research.google.com/drive/1t_ekYJLWWdi69n9_ty9n4hnJXuTUUKoU?usp=sharing>`_)
* `End to End Pipeline <https://github.com/tansey-lab/bayestme/blob/main/notebooks/end_to_end_demo.ipynb>`_ (Run it on `Colab <https://colab.research.google.com/drive/1JcZkLaXqXkTVsaON2xP9M0l-Yf1rCRkZ?usp=sharing>`_)