BayesTME¶
A unified statistical framework for spatial transcriptomics.
This package implements BayesTME, a fully Bayesian method for analyzing ST data without needing single-cell RNA-seq (scRNA) reference data.
Contents¶
- Installation
- Overview
- Data Format
- Demo Notebooks
- Command Line Interface
- Example Workflow
- bayestme package
- Submodules
- bayestme.bleeding_correction module
- bayestme.communities module
- bayestme.cv_likelihoods module
- bayestme.data module
- bayestme.deconvolution module
- bayestme.expression_truth module
- bayestme.fast_multivariate_normal module
- bayestme.gene_filtering module
- bayestme.gfbt_multinomial module
- bayestme.hmm_fast module
- bayestme.log_config module
- bayestme.model_bkg module
- bayestme.phenotype_selection module
- bayestme.plotting module
- bayestme.semi_synthetic_spatial module
- bayestme.spatial_expression module
- bayestme.synthetic_data module
- bayestme.utils module
- Fine Mapping Workflow
- 🚀 Github